[00:00:00] =>> Building science/py-scikit-sparse [00:00:00] build started at 2025-04-26T11:00:13+02:00 [00:00:00] port directory: /usr/ports/science/py-scikit-sparse [00:00:00] package name: py311-scikit-sparse-0.4.16 [00:00:00] building for: FreeBSD pkg.mfl.dk 14.2-RELEASE-p3 FreeBSD 14.2-RELEASE-p3 amd64 [00:00:00] maintained by: yuri@FreeBSD.org [00:00:00] port version: 0.4.16 [00:00:00] port revision: 0 [00:00:00] Makefile datestamp: -rw-r--r-- 1 root wheel 988 Apr 23 11:35 /usr/ports/science/py-scikit-sparse/Makefile [00:00:00] Ports top last git commit: 808f64e9a347 [00:00:00] Ports top unclean checkout: no [00:00:02] =>> Inspecting /usr/local/poudriere/data/.m/142amd64-local/05//usr/ports/science/py-scikit-sparse for modifications to git checkout... no [00:00:03] Port dir last git commit: 95a864ca3cfa [00:00:03] Port dir unclean checkout: no [00:00:03] Poudriere version: poudriere-git-3.4.99.20250209 [00:00:03] Host OSVERSION: 1402000 [00:00:03] Jail OSVERSION: 1402000 [00:00:03] Job Id: 05 [00:00:03] [00:00:03] ---Begin Environment--- [00:00:03] SHELL=/bin/sh [00:00:03] OSVERSION=1402000 [00:00:03] UNAME_v=FreeBSD 14.2-RELEASE-p3 [00:00:03] UNAME_r=14.2-RELEASE-p3 [00:00:03] BLOCKSIZE=K [00:00:03] MAIL=/var/mail/root [00:00:03] MM_CHARSET=UTF-8 [00:00:03] LANG=C.UTF-8 [00:00:03] STATUS=1 [00:00:03] HOME=/root [00:00:03] PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin [00:00:03] MAKE_OBJDIR_CHECK_WRITABLE=0 [00:00:03] LOCALBASE=/usr/local [00:00:03] USER=root [00:00:03] POUDRIERE_NAME=poudriere-git [00:00:03] POUDRIERE_VERSION=3.4.99.20250209 [00:00:03] MASTERMNT=/usr/local/poudriere/data/.m/142amd64-local/ref [00:00:03] LC_COLLATE=C [00:00:03] POUDRIERE_BUILD_TYPE=bulk [00:00:03] PACKAGE_BUILDING=yes [00:00:03] SAVED_TERM=tmux-256color [00:00:03] OUTPUT_REDIRECTED_STDERR=4 [00:00:03] OUTPUT_REDIRECTED=1 [00:00:03] PWD=/usr/local/poudriere/data/.m/142amd64-local/05/.p [00:00:03] OUTPUT_REDIRECTED_STDOUT=3 [00:00:03] P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS [00:00:03] MASTERNAME=142amd64-local [00:00:03] OLDPWD=/usr/local/poudriere/data/.m/142amd64-local/ref/.p/pool [00:00:03] POUDRIERE_PKGNAME=poudriere-git-3.4.99.20250209 [00:00:03] PREFIX=/usr/local [00:00:03] POUDRIEREPATH=/usr/local/bin/poudriere [00:00:03] ---End Environment--- [00:00:03] [00:00:03] ---Begin Poudriere Port Flags/Env--- [00:00:03] PORT_FLAGS= [00:00:03] PKGENV= [00:00:03] FLAVOR=py311 [00:00:03] MAKE_ARGS= FLAVOR=py311 [00:00:03] ---End Poudriere Port Flags/Env--- [00:00:03] [00:00:03] ---Begin OPTIONS List--- [00:00:03] ---End OPTIONS List--- [00:00:03] [00:00:03] --MAINTAINER-- [00:00:03] yuri@FreeBSD.org [00:00:03] --End MAINTAINER-- [00:00:03] [00:00:03] --PORTVERSION-- [00:00:03] 0.4.16 [00:00:03] --End PORTVERSION-- [00:00:03] [00:00:03] --PORTREVISION-- [00:00:03] 0 [00:00:03] --End PORTREVISION-- [00:00:03] [00:00:03] --CONFIGURE_ARGS-- [00:00:03] [00:00:03] --End CONFIGURE_ARGS-- [00:00:03] [00:00:03] --CONFIGURE_ENV-- [00:00:03] F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh [00:00:03] --End CONFIGURE_ENV-- [00:00:03] [00:00:03] --MAKE_ENV-- [00:00:03] F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" [00:00:03] --End MAKE_ENV-- [00:00:03] [00:00:03] --PLIST_SUB-- [00:00:03] PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/scikit-sparse" EXAMPLESDIR="share/examples/scikit-sparse" DATADIR="share/scikit-sparse" WWWDIR="www/scikit-sparse" ETCDIR="etc/scikit-sparse" [00:00:03] --End PLIST_SUB-- [00:00:03] [00:00:03] --SUB_LIST-- [00:00:03] PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scikit-sparse DOCSDIR=/usr/local/share/doc/scikit-sparse EXAMPLESDIR=/usr/local/share/examples/scikit-sparse WWWDIR=/usr/local/www/scikit-sparse ETCDIR=/usr/local/etc/scikit-sparse [00:00:03] --End SUB_LIST-- [00:00:03] [00:00:03] ---Begin make.conf--- [00:00:03] USE_PACKAGE_DEPENDS=yes [00:00:03] BATCH=yes [00:00:03] WRKDIRPREFIX=/wrkdirs [00:00:03] PORTSDIR=/usr/ports [00:00:03] PACKAGES=/packages [00:00:03] DISTDIR=/distfiles [00:00:03] FORCE_PACKAGE=yes [00:00:03] PACKAGE_BUILDING=yes [00:00:03] PACKAGE_BUILDING_FLAVORS=yes [00:00:03] #### /usr/local/etc/poudriere.d/make.conf #### [00:00:03] DEFAULT_VERSIONS+= ssl=openssl [00:00:03] DEFAULT_VERSIONS+= mysql=11.4m [00:00:03] OPTIONS_SET+= LDAP [00:00:03] OPTIONS_SET+= QT6 [00:00:03] #OPTIONS_UNSET+=X11 [00:00:03] DEFAULT_VERSIONS+= php=8.2 [00:00:03] graphics_cairo_UNSET+= XCB [00:00:03] x11-toolkits_gtk30_UNSET += ATK_BRIDGE COLORD [00:00:03] #ALLOW_UNSUPPORTED_SYSTEM=yes [00:00:03] CCACHE_DIR=/var/cache/ccache [00:00:03] WITH_CCACHE_BUILD=yes [00:00:03] WITH_CCACHE_BUILD=yes [00:00:03] CCACHE_DIR=/root/.ccache [00:00:03] #### Misc Poudriere #### [00:00:03] .include "/etc/make.conf.ports_env" [00:00:03] GID=0 [00:00:03] UID=0 [00:00:03] DISABLE_MAKE_JOBS=poudriere [00:00:03] ---End make.conf--- [00:00:03] --Resource limits-- [00:00:03] cpu time (seconds, -t) unlimited [00:00:03] file size (512-blocks, -f) unlimited [00:00:03] data seg size (kbytes, -d) 33554432 [00:00:03] stack size (kbytes, -s) 524288 [00:00:03] core file size (512-blocks, -c) unlimited [00:00:03] max memory size (kbytes, -m) unlimited [00:00:03] locked memory (kbytes, -l) unlimited [00:00:03] max user processes (-u) 58500 [00:00:03] open files (-n) 8192 [00:00:03] virtual mem size (kbytes, -v) unlimited [00:00:03] swap limit (kbytes, -w) unlimited [00:00:03] socket buffer size (bytes, -b) unlimited [00:00:03] pseudo-terminals (-p) unlimited [00:00:03] kqueues (-k) unlimited [00:00:03] umtx shared locks (-o) unlimited [00:00:03] pipebuf (-y) unlimited [00:00:03] --End resource limits-- [00:00:03] =================================================== [00:00:03] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:03] ===> License BSD2CLAUSE accepted by the user [00:00:03] =========================================================================== [00:00:03] =================================================== [00:00:03] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:04] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/sbin/pkg - not found [00:00:04] ===> Installing existing package /packages/All/pkg-2.1.2.pkg [00:00:05] [pkg.mfl.dk] Installing pkg-2.1.2... [00:00:05] [pkg.mfl.dk] Extracting pkg-2.1.2: .......... done [00:00:11] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/sbin/pkg - found [00:00:11] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:00:11] =========================================================================== [00:00:11] =================================================== [00:00:11] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:11] =========================================================================== [00:00:11] =================================================== [00:00:11] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:11] ===> License BSD2CLAUSE accepted by the user [00:00:12] => scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz doesn't seem to exist in /portdistfiles/. [00:00:12] => Attempting to fetch https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.16?dummy=/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz [00:00:13] fetch: https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.16?dummy=/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz: size unknown [00:00:13] fetch: https://codeload.github.com/scikit-sparse/scikit-sparse/tar.gz/v0.4.16?dummy=/scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz: size of remote file is not known [00:00:13] scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz 405 kB 4016 kBps 00s [00:00:13] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.16 for building [00:00:13] =========================================================================== [00:00:13] =================================================== [00:00:13] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:13] ===> License BSD2CLAUSE accepted by the user [00:00:14] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.16 for building [00:00:15] => SHA256 Checksum OK for scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz. [00:00:15] =========================================================================== [00:00:15] =================================================== [00:00:15] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:15] =========================================================================== [00:00:15] =================================================== [00:00:15] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:16] ===> License BSD2CLAUSE accepted by the user [00:00:16] ===> Fetching all distfiles required by py311-scikit-sparse-0.4.16 for building [00:00:16] ===> Extracting for py311-scikit-sparse-0.4.16 [00:00:16] => SHA256 Checksum OK for scikit-sparse-scikit-sparse-v0.4.16_GH0.tar.gz. [00:00:17] =========================================================================== [00:00:17] =================================================== [00:00:17] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:17] =========================================================================== [00:00:17] =================================================== [00:00:17] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:00:17] ===> Patching for py311-scikit-sparse-0.4.16 [00:00:17] =========================================================================== [00:00:17] =================================================== [00:00:17] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:00:18] ===> py311-scikit-sparse-0.4.16 depends on package: py311-numpy>=1.16,1<1.27,1 - not found [00:00:18] ===> Installing existing package /packages/All/py311-numpy-1.26.4_6,1.pkg [00:00:18] [pkg.mfl.dk] Installing py311-numpy-1.26.4_6,1... [00:00:56] [pkg.mfl.dk] `-- Installing gcc13-13.3.0_2... [00:00:56] [pkg.mfl.dk] | `-- Installing binutils-2.44,1... [00:00:56] [pkg.mfl.dk] | | `-- Installing indexinfo-0.3.1_1... [00:00:56] [pkg.mfl.dk] | | `-- Extracting indexinfo-0.3.1_1: .... done [00:00:56] [pkg.mfl.dk] | | `-- Installing zstd-1.5.7... [00:00:56] [pkg.mfl.dk] | | `-- Installing liblz4-1.10.0,1... [00:00:56] [pkg.mfl.dk] | | `-- Extracting liblz4-1.10.0,1: .......... done [00:00:56] [pkg.mfl.dk] | | `-- Extracting zstd-1.5.7: .......... done [00:00:57] [pkg.mfl.dk] | `-- Extracting binutils-2.44,1: .......... done [00:01:02] [pkg.mfl.dk] | `-- Installing gmp-6.3.0... [00:01:02] [pkg.mfl.dk] | `-- Extracting gmp-6.3.0: .......... done [00:01:03] [pkg.mfl.dk] | `-- Installing mpc-1.3.1_1... [00:01:03] [pkg.mfl.dk] | | `-- Installing mpfr-4.2.2,1... [00:01:03] [pkg.mfl.dk] | | `-- Extracting mpfr-4.2.2,1: .......... done [00:01:05] [pkg.mfl.dk] | `-- Extracting mpc-1.3.1_1: ......... done [00:01:06] [pkg.mfl.dk] `-- Extracting gcc13-13.3.0_2: .......... done [00:01:18] [pkg.mfl.dk] `-- Installing openblas-0.3.29_1,2... [00:01:18] [pkg.mfl.dk] `-- Extracting openblas-0.3.29_1,2: .......... done [00:01:21] [pkg.mfl.dk] `-- Installing python311-3.11.12... [00:01:21] [pkg.mfl.dk] | `-- Installing gettext-runtime-0.23.1... [00:01:21] [pkg.mfl.dk] | `-- Extracting gettext-runtime-0.23.1: .......... done [00:01:23] [pkg.mfl.dk] | `-- Installing libffi-3.4.8... [00:01:23] [pkg.mfl.dk] | `-- Extracting libffi-3.4.8: .......... done [00:01:24] [pkg.mfl.dk] | `-- Installing mpdecimal-4.0.0... [00:01:24] [pkg.mfl.dk] | `-- Extracting mpdecimal-4.0.0: .......... done [00:01:25] [pkg.mfl.dk] | `-- Installing openssl-3.0.16,1... [00:01:25] [pkg.mfl.dk] | `-- Extracting openssl-3.0.16,1: .......... done [00:01:31] [pkg.mfl.dk] | `-- Installing readline-8.2.13_2... [00:01:31] [pkg.mfl.dk] | `-- Extracting readline-8.2.13_2: .......... done [00:01:33] [pkg.mfl.dk] `-- Extracting python311-3.11.12: .......... done [00:01:43] [pkg.mfl.dk] `-- Installing suitesparse-umfpack-6.3.5_1... [00:01:43] [pkg.mfl.dk] | `-- Installing suitesparse-amd-3.3.3... [00:01:43] [pkg.mfl.dk] | | `-- Installing suitesparse-config-7.10.2... [00:01:43] [pkg.mfl.dk] | | `-- Extracting suitesparse-config-7.10.2: .......... done [00:01:44] [pkg.mfl.dk] | `-- Extracting suitesparse-amd-3.3.3: .......... done [00:01:45] [pkg.mfl.dk] | `-- Installing suitesparse-camd-3.3.3... [00:01:45] [pkg.mfl.dk] | `-- Extracting suitesparse-camd-3.3.3: .......... done [00:01:47] [pkg.mfl.dk] | `-- Installing suitesparse-ccolamd-3.3.4... [00:01:47] [pkg.mfl.dk] | `-- Extracting suitesparse-ccolamd-3.3.4: .......... done [00:01:48] [pkg.mfl.dk] | `-- Installing suitesparse-cholmod-5.3.2... [00:01:48] [pkg.mfl.dk] | | `-- Installing suitesparse-colamd-3.3.4... [00:01:48] [pkg.mfl.dk] | | `-- Extracting suitesparse-colamd-3.3.4: .......... done [00:01:49] [pkg.mfl.dk] | `-- Extracting suitesparse-cholmod-5.3.2: .......... done [00:01:50] [pkg.mfl.dk] `-- Extracting suitesparse-umfpack-6.3.5_1: .......... done [00:01:51] [pkg.mfl.dk] Extracting py311-numpy-1.26.4_6,1: .......... done [00:01:54] ===== [00:01:54] Message from gcc13-13.3.0_2: [00:01:54] [00:01:54] -- [00:01:54] To ensure binaries built with this toolchain find appropriate versions [00:01:54] of the necessary run-time libraries, you may want to link using [00:01:54] [00:01:54] -Wl,-rpath=/usr/local/lib/gcc13 [00:01:54] [00:01:54] For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens [00:01:54] transparently. [00:01:54] ===== [00:01:54] Message from python311-3.11.12: [00:01:54] [00:01:54] -- [00:01:54] Note that some standard Python modules are provided as separate ports [00:01:54] as they require additional dependencies. They are available as: [00:01:54] [00:01:54] py311-gdbm databases/py-gdbm@py311 [00:01:54] py311-sqlite3 databases/py-sqlite3@py311 [00:01:54] py311-tkinter x11-toolkits/py-tkinter@py311 [00:01:54] ===> py311-scikit-sparse-0.4.16 depends on package: py311-numpy>=1.16,1<1.27,1 - found [00:01:54] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:01:54] ===> py311-scikit-sparse-0.4.16 depends on package: py311-scipy>=0.19 - not found [00:01:54] ===> Installing existing package /packages/All/py311-scipy-1.11.1_4,1.pkg [00:01:55] [pkg.mfl.dk] Installing py311-scipy-1.11.1_4,1... [00:01:56] [pkg.mfl.dk] `-- Installing blas-3.12.1... [00:01:56] [pkg.mfl.dk] `-- Extracting blas-3.12.1: ........ done [00:01:57] [pkg.mfl.dk] Extracting py311-scipy-1.11.1_4,1: .......... done [00:02:05] ===> py311-scikit-sparse-0.4.16 depends on package: py311-scipy>=0.19 - found [00:02:05] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:02:05] ===> py311-scikit-sparse-0.4.16 depends on executable: gfortran13 - found [00:02:05] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/bin/python3.11 - found [00:02:05] ===> py311-scikit-sparse-0.4.16 depends on executable: gfortran13 - found [00:02:05] ===> py311-scikit-sparse-0.4.16 depends on package: py311-cython>=0.29.37<3 - not found [00:02:05] ===> Installing existing package /packages/All/py311-cython-0.29.37_2.pkg [00:02:05] [pkg.mfl.dk] Installing py311-cython-0.29.37_2... [00:02:05] [pkg.mfl.dk] Extracting py311-cython-0.29.37_2: .......... done [00:02:06] ===> py311-scikit-sparse-0.4.16 depends on package: py311-cython>=0.29.37<3 - found [00:02:06] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:02:06] ===> py311-scikit-sparse-0.4.16 depends on package: py311-setuptools>=63.1.0 - not found [00:02:06] ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [00:02:06] [pkg.mfl.dk] Installing py311-setuptools-63.1.0_3... [00:02:06] [pkg.mfl.dk] Extracting py311-setuptools-63.1.0_3: .......... done [00:02:07] ===> py311-scikit-sparse-0.4.16 depends on package: py311-setuptools>=63.1.0 - found [00:02:07] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:02:07] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/bin/python3.11 - found [00:02:07] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/bin/as - found [00:02:07] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/bin/ccache - not found [00:02:07] ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [00:02:07] [pkg.mfl.dk] Installing ccache-3.7.12_8... [00:02:07] [pkg.mfl.dk] Extracting ccache-3.7.12_8: .......... done [00:02:08] Create compiler links... [00:02:08] create symlink for cc [00:02:08] create symlink for cc (world) [00:02:08] create symlink for c++ [00:02:08] create symlink for c++ (world) [00:02:08] create symlink for CC [00:02:08] create symlink for CC (world) [00:02:08] create symlink for gcc13 [00:02:08] create symlink for gcc13 (world) [00:02:08] create symlink for g++13 [00:02:08] create symlink for g++13 (world) [00:02:08] create symlink for cpp13 [00:02:08] create symlink for cpp13 (world) [00:02:08] create symlink for clang [00:02:08] create symlink for clang (world) [00:02:08] create symlink for clang++ [00:02:08] create symlink for clang++ (world) [00:02:08] ===== [00:02:08] Message from ccache-3.7.12_8: [00:02:08] [00:02:08] -- [00:02:08] NOTE: [00:02:08] Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for [00:02:08] information on using ccache with FreeBSD ports and src. [00:02:08] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/bin/ccache - found [00:02:08] ===> Returning to build of py311-scikit-sparse-0.4.16 [00:02:08] =========================================================================== [00:02:08] =================================================== [00:02:08] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:02:09] ===> py311-scikit-sparse-0.4.16 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so) [00:02:11] ===> py311-scikit-sparse-0.4.16 depends on shared library: libcholmod.so - found (/usr/local/lib/libcholmod.so) [00:02:13] =========================================================================== [00:02:13] =================================================== [00:02:13] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:02:14] ===> Configuring for py311-scikit-sparse-0.4.16 [00:02:40] /bin/sh: brew: not found [00:02:43] Compiling sksparse/cholmod.pyx because it changed. [00:02:43] [1/1] Cythonizing sksparse/cholmod.pyx [00:02:43] running config [00:02:44] =========================================================================== [00:02:44] =================================================== [00:02:44] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:02:44] ===> Building for py311-scikit-sparse-0.4.16 [00:02:46] /bin/sh: brew: not found [00:02:47] running build [00:02:47] running build_py [00:02:47] creating build [00:02:47] creating build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311 [00:02:47] creating build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:02:47] copying sksparse/__init__.py -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:02:47] copying sksparse/test_cholmod.py -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:02:47] creating build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:02:47] copying sksparse/test_data/well1850.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:02:47] copying sksparse/test_data/well1033.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:02:47] copying sksparse/test_data/well1850_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:02:47] copying sksparse/test_data/illc1850_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:02:47] copying sksparse/test_data/illc1033.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:02:47] copying sksparse/test_data/well1033_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:02:47] copying sksparse/test_data/illc1850.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:02:47] copying sksparse/test_data/illc1033_rhs1.mtx.gz -> build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data [00:02:47] running build_ext [00:02:47] building 'sksparse.cholmod' extension [00:02:47] creating build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311 [00:02:47] creating build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse [00:02:47] cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing -fPIC -Isksparse -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/include/suitesparse -I/dev/null/include/suitesparse/ -I/usr/local/include/python3.11 -c sksparse/cholmod.c -o build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.o [00:03:23] In file included from sksparse/cholmod.c:785: [00:03:23] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5: [00:03:23] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: [00:03:23] In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: [00:03:23] /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] [00:03:23] 17 | #warning "Using deprecated NumPy API, disable it with " \ [00:03:23] | ^ [00:03:23] sksparse/cholmod.c:21963:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] [00:03:23] 21963 | CYTHON_FALLTHROUGH; [00:03:23] | ^ [00:03:23] sksparse/cholmod.c:378:34: note: expanded from macro 'CYTHON_FALLTHROUGH' [00:03:23] 378 | #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) [00:03:23] | ^ [00:03:23] sksparse/cholmod.c:21974:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] [00:03:23] 21974 | CYTHON_FALLTHROUGH; [00:03:23] | ^ [00:03:23] sksparse/cholmod.c:378:34: note: expanded from macro 'CYTHON_FALLTHROUGH' [00:03:23] 378 | #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) [00:03:23] | ^ [00:03:23] 3 warnings generated. [00:03:24] cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -O2 -pipe -I/usr/local/include/suitesparse -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.o -L/dev/null/lib -L/usr/local/lib -lcholmod -o build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.cpython-311.so [00:03:24] =========================================================================== [00:03:24] =================================================== [00:03:24] ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 [00:03:25] ===> py311-scikit-sparse-0.4.16 depends on package: py311-numpy>=1.16,1<1.27,1 - found [00:03:25] ===> py311-scikit-sparse-0.4.16 depends on package: py311-scipy>=0.19 - found [00:03:25] ===> py311-scikit-sparse-0.4.16 depends on executable: gfortran13 - found [00:03:25] ===> py311-scikit-sparse-0.4.16 depends on file: /usr/local/bin/python3.11 - found [00:03:25] =========================================================================== [00:03:25] =================================================== [00:03:25] ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 [00:03:26] ===> Staging for py311-scikit-sparse-0.4.16 [00:03:26] ===> Generating temporary packing list [00:03:29] /bin/sh: brew: not found [00:03:31] running install [00:03:31] /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. [00:03:31] warnings.warn( [00:03:31] running build [00:03:31] running build_py [00:03:31] running build_ext [00:03:31] running install_lib [00:03:31] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11 [00:03:31] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages [00:03:31] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_cholmod.py -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:03:31] creating /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1033_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1033_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1033.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1850.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1850_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/illc1850_rhs1.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1850.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/test_data/well1033.mtx.gz -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_data [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/cholmod.cpython-311.so -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:03:31] copying build/lib.freebsd-14.2-RELEASE-p3-amd64-cpython-311/sksparse/__init__.py -> /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse [00:03:31] byte-compiling /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/test_cholmod.py to test_cholmod.cpython-311.pyc [00:03:31] byte-compiling /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/sksparse/__init__.py to __init__.cpython-311.pyc [00:03:31] writing byte-compilation script '/tmp/tmpowsznszl.py' [00:03:31] /usr/local/bin/python3.11 /tmp/tmpowsznszl.py [00:03:33] removing /tmp/tmpowsznszl.py [00:03:33] running install_egg_info [00:03:33] running egg_info [00:03:33] creating scikit_sparse.egg-info [00:03:33] writing scikit_sparse.egg-info/PKG-INFO [00:03:33] writing dependency_links to scikit_sparse.egg-info/dependency_links.txt [00:03:33] writing requirements to scikit_sparse.egg-info/requires.txt [00:03:33] writing top-level names to scikit_sparse.egg-info/top_level.txt [00:03:33] writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:03:33] reading manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:03:33] reading manifest template 'MANIFEST.in' [00:03:34] adding license file 'LICENSE.txt' [00:03:34] writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' [00:03:34] Copying scikit_sparse.egg-info to /wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/stage/usr/local/lib/python3.11/site-packages/scikit_sparse-0.4.16-py3.11.egg-info [00:03:34] running install_scripts [00:03:34] writing list of installed files to '/wrkdirs/usr/ports/science/py-scikit-sparse/work-py311/.PLIST.pymodtmp' [00:03:34] ====> Compressing man pages (compress-man) [00:03:35] =========================================================================== [00:03:35] =================================================== [00:03:35] ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-04-26T09:00:13+00:00' 'PKG_NOTE_ports_top_git_hash=808f64e9a347' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=95a864ca3cfa' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20250209' NO_DEPENDS=yes USER=root UID=0 GID=0 [00:03:35] ===> Building packages for py311-scikit-sparse-0.4.16 [00:03:37] ===> Building py311-scikit-sparse-0.4.16 [00:03:40] =========================================================================== [00:03:40] =>> Cleaning up wrkdir [00:03:41] ===> Cleaning for py311-scikit-sparse-0.4.16 [00:03:43] build of science/py-scikit-sparse@py311 | py311-scikit-sparse-0.4.16 ended at 2025-04-26T11:03:55+02:00 [00:03:43] build time: 00:03:47